I will help you in protein peptide, dna docking and md simulation
Computational Biologist and Data Scientist
Nivel 2
Ha cumplido con los criterios de alto rendimiento y tiene un historial comprobado de cumplimiento de las expectativas de los clientes.
Con alta capacidad de respuesta
Conocido por sus respuestas excepcionalmente rápidas
Acerca de este Servicio
DockVision is more than a typical freelance service. Most sellers can offer bioinformatics services. The real difference is knowing which method to use, how to design the workflow correctly, and how to turn raw computational output into scientifically meaningful results. That is where my expertise stands apart.
I am a computational Scientist with 5+ years of hands-on experience and 100+ completed projects for clients across 30+ countries. I handle complex research workflows that go beyond simply running software and delivering basic output.
My expertise includes:
- Protein-Ligand Docking
- Protein-Protein Docking
- Protein-DNA/RNA Docking
- Metal Ion Docking
- Nano-particle Docking
- Peptide Docking
- Membrane Simulations
- Nucleic Acid Simulations
- Peptide/Polymer Simulations
- Enhanced-Sampling MD Simulations
Post-Simulation Analysis:
- MM/PBSA & MM/GBSA
- PCA/DCCM/ FEL
- SASA & Rg
- H-Bond Analysis
- Clustering Analysis
- ProteinLigand Interaction Analysis
- Secondary Structure Analysis
- Contact Map Analysis
- Distance & Angle Analysis
- Residue Interaction
My goal is to deliver scientifically sound, reproducible analysis with clear interpretation, publication-quality visualization and well organized results.
Mi porfolio
FAQ
What is protein–peptide docking?
Protein–peptide docking predicts how a peptide binds to a target protein and identifies key interactions and binding sites.
Which tools do you use for protein–peptide docking? .
I use HADDOCK, ClusPro, AutoDock Vina, Rosetta FlexPepDock, Schrödinger, and MOE for accurate docking results
Can you analyze 2D and 3D interactions?
Yes, I provide detailed 2D interaction maps and 3D structural visualization of the protein–peptide complex.
Do you perform Molecular Dynamics (MD) on protein–peptide complexes?
Yes, I simulate the complexes over time to study stability, flexibility, and interaction dynamics.
What analyses are included after MD simulation?
RMSD, RMSF, Radius of Gyration (Rg), hydrogen bonds, SASA, and binding free energy (MM-PBSA/MM-GBSA) are all included.
Can you predict binding affinity for peptides?
Yes, I provide binding scores and interaction profiles to rank peptide candidates.
Are your results suitable for publication?
Yes, all reports include publication-ready figures, graphs, and scientific interpretations.
How long does a protein–peptide docking project take?
Docking usually takes 1–3 days; MD simulations depend on the requested simulation length (e.g., 50–200 ns).
8 comentarios sobre este Servicio
| (6) | ||
| (2) | ||
| (0) | ||
| (0) | ||
| (0) |
Desglose de calificaciones
- Nivel de comunicación del Freelancer
- Calidad de la entrega
- Valor de la entrega
Ordenar por
M maalotaibi

Arabia Saudita
Colaboración continuaThe quality of the work and the turnaround time are excellent. The service is highly professional, and I have worked with him several times.
USD 100-USD 200
Precio
2 días
Tiempo
Útil?A aashamrani

Arabia Saudita
Colaboración continuaVery good!
USD 200-USD 400
Precio
6 días
Tiempo
Útil?J joy_hj

Estados Unidos
Colaboración continuaExcellent delviery was asap
USD 100-USD 200
Precio
5 días
Tiempo
Útil?J joy_hj

Estados Unidos
Colaboración continuanice work recom
USD 50
Precio
4 días
Tiempo
Útil?J just_som_motion

Italia
Colaboración continuaAttenzione ai dettagli, super consigliato
USD 100-USD 200
Precio
8 días
Tiempo
Útil?
8 comentarios sobre este Servicio
| (6) | ||
| (2) | ||
| (0) | ||
| (0) | ||
| (0) |
Desglose de calificaciones
- Nivel de comunicación del Freelancer
- Calidad de la entrega
- Valor de la entrega
Ordenar por
M maalotaibi

Arabia Saudita
Colaboración continuaThe quality of the work and the turnaround time are excellent. The service is highly professional, and I have worked with him several times.
USD 100-USD 200
Precio
2 días
Tiempo
Útil?A aashamrani

Arabia Saudita
Colaboración continuaVery good!
USD 200-USD 400
Precio
6 días
Tiempo
Útil?J joy_hj

Estados Unidos
Colaboración continuaExcellent delviery was asap
USD 100-USD 200
Precio
5 días
Tiempo
Útil?J joy_hj

Estados Unidos
Colaboración continuanice work recom
USD 50
Precio
4 días
Tiempo
Útil?J just_som_motion

Italia
Colaboración continuaAttenzione ai dettagli, super consigliato
USD 100-USD 200
Precio
8 días
Tiempo
Útil?

